PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_52085g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 467aa    MW: 51096.6 Da    PI: 5.6857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_52085g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11306353455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN+++  L++l+P++    +k   Ka +L + ++Y++sLq
  MA_52085g0010 306 SHSLAERVRREKINQRMKFLQDLVPTC----NKVTGKAVMLDEIINYVQSLQ 353
                    8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.16E-17300371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-12300357No hitNo description
Gene3DG3DSA:4.10.280.102.6E-18302370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.967302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8306353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-11308358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDPDFGVERQ AFEAVPDSKS LVSLHSSLSC SFNTMDTIFC DESRYSQKCT GEFGEIASQN  60
AFGGAPESII SNAGGAFFAD PSFAAKYLQK SSFSPVMAKE TSNADGSGSI GGPNVPILAN  120
SVQFHTPSVK NSVNARRWRN LEASHLGSEV SKFGIGSVPS ALVQFPSDPG FVEQAAKFSP  180
FNNIDRNSSE NVVCGASNLP PIVGGVQQGG GENMSVFSEP TKCVDDGNGK KRRAKSLTSA  240
ENSKEPEEAK AKRCRLGESS EIDDDDNNDE TSDSNSKKGK EKNSNVSQKD DNYIHVRARR  300
GQATDSHSLA ERVRREKINQ RMKFLQDLVP TCNKVTGKAV MLDEIINYVQ SLQHQVEFLS  360
MKLATVNPKL DFNIDNFFAK EMSGSFSSKG MSPTYFHLDQ LKQASLQTVP SPGSDIPSTM  420
SSVDSAEMFD GTNFQRQEGW DSELQNMYNM GLLQSRLQQH QHQQRPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234KKRRAK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0850360.0EF085036.1 Picea sitchensis clone WS0297_L11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NUN30.0A9NUN3_PICSI; Putative uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-52bHLH family protein